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Programs:
OpenGL: Tour Into the Picture [Open-source] 
Tour Into the Picture (TIP) is for easily making animations from one 2D picture or photograph of a scene.
Educational Material at ETH Zürich (PDF version) and Sejong Universityg (PDF version).
The alternative version written in Japanese is also available.
Java Applet: Mandelbrot Set [Open-source] 
The Mandelbrot Set has become popular far outside of mathematics both for its aesthetic appeal and its complicated structure, arising from a simple definition. This is largely due to the efforts of Benoit Mandelbrot (and others), who worked hard to communicate this area of mathematics to the general public.
An image generated by this applet has been used in
The Humble Approach Initiative symposium
program book on Mathematics and Its Significance (web version).
Java Applet: The Game of Life [Open-source] 
The Game of Life is a cellular automaton devised by the British mathematician John Horton Conway in 1970. It is the best-known example of a cellular automaton.
Educational Material at der Ludwigs-Maximilians-Universität München (PDF version).
Java Applet: Branching: L-system Tree [Open-source] 
An L-system or Lindenmayer system is a formal grammar (a set of rules and symbols) most famously used to model the growth processes of plant development, though able to model the morphology of a variety of organisms.
Java Applet: Bifurcation of Logistic Map [Open-source] 
The Logistic Map is a polynomial mapping, often cited as an archetypal example of how complex, chaotic behavior can arise from very simple non-linear dynamical equations.
Educational Material at The University of Tokyo.
C: The Lorentz Attractor [Open-source] 
The Lorenz Attractor, introduced by Edward Lorenz in 1963, is a non-linear three-dimensional deterministic dynamical system derived from the simplified equations of convection rolls arising in the dynamical equations of the atmosphere.
The alternative version written in Japanese is also available.
An image generated by this program has been used in DOUBLE BUBBLE UNIVERSE (web version).
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